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Archive for the ‘MichiganUP’ Category
Saturday, January 10th, 2009
First week back in CSIS after the holiday and I got cracking with the winter white-tailed deer density paper we’re working. Understanding the winter spatial distribution of deer are important for the wider simulation modelling project we’re working on as the model needs to be able to estimate deer densities at each model timestep. We need to do this so that we might represent the impacts of deer on tree regeneration following timber harvest in the simulation model. The work the paper will present is using data from several sources:
- data we collected this summer regarding forest stand composition and structure,
- similar data kindly shared with us by the Michigan DNR,
- estimates of deer density derived from deer pellet counts we also made this year,
- other environmental data such as snow depth data from SNODAS.
Here’s my first stab at the opening paragraph (which will no doubt change before publication):
Spatial distributions of wildlife species in forest landscapes are known to be influenced by forest-cover composition and pattern. The influence of forest stand structure on the spatial distribution of wildlife is less well understood. However, understanding the spatial distribution of herbivorous ungulate species that modify vegetation regeneration dynamics is vital for forest managers entrusted with the goal of ensuring both ecological and economic sustainability of their forests. Feedbacks between timber harvest, landscape pattern, stand structure, and herbivore population density may lead to spatial variation in tree regeneration success. In this paper we explore how forest stand structure and landscape pattern, and their interactions with other environmental factors, can be used to predict and understand the winter spatial distribution of white-tailed deer (Odocoileus virginianus) during in the managed forests of the central Upper Peninsula (U.P.) of Michigan, USA.
I’ll update the status of the paper here periodically.
 This work by James D.A. Millington is licensed under a Creative Commons Attribution-Noncommercial-Share Alike 3.0 United States License.
Posted in Ecological, MichiganUP, Modelling, Publications | Comments Off
Sunday, December 7th, 2008
Megan Matonis, one of the Masters students on the Michigan UP project, is headed to Washington D.C. for the National Council for Science and the Environment 9th National Conference on Science, Policy, and the Environment with a poster under her arm. Entitled Anticipating Threats to Northern Hardwood Forest Biodiversity with an Ecological-Economic Model the poster gives an overview of the modelling project and highlights some of the effects of deer browse and timber harvest on tree sapling and songbird diversity. Hopefully Megan will get some interesting questions and return with some new ideas about how we might use our model once it is up and running.
I haven’t posted on the blog for a little while. The main causes have been end of semester craziness and a trip to Montreal over Thanksgiving (maybe some pictures will appear on the photos page soon). More on CHANS research soon…
 This work by James D.A. Millington is licensed under a Creative Commons Attribution-Noncommercial-Share Alike 3.0 United States License.
Posted in Ecological, Forests, MichiganUP, Publications | Comments Off
Tuesday, July 29th, 2008
 I’m back from fieldwork in Michigan’s Upper Peninsula. It was quite a short, but eventful, trip to get some forest stand cruises going – lightning, flat tyres, and an incident with some angry bees (we escaped with only a couple of stings). Unfortunately I didn’t have my camera on hand to record any of these (mis)adventures. Now, on with preparing my Systems Modeling and Simulation course for the fall and coding our model to integrate with FVS…
 This work by James D.A. Millington is licensed under a Creative Commons Attribution-Noncommercial-Share Alike 3.0 United States License.
Posted in MichiganUP | Comments Off
Tuesday, July 15th, 2008
In many forest landscapes a desirable management objective is the sustainability of both economic productivity and healthy wildlife populations. Such dual-objective management requires a good understanding of the interactions between the many components and actors at several scales and across large extents. Computer simulation models have been enthusiastically developed by scientists to improve knowledge about the dynamics of forest growth and disturbance (for example by timber harvest or wildfire).
However, Papaik, Sturtevant and Messier write in their recent guest editorial for Ecology and Society that “models are constrained by persistent boundaries between scientific disciplines, and by the scale-specific processes for which they were created”. Consequently, they suggest that:
“A more integrated and flexible modeling framework is required, one that guides the selection of which processes to model, defines the scales at which they are relevant, and carefully integrates them into a cohesive whole”.
This new framework is illustrated by the papers in the Ecology and Society special feature ‘Crossing Scales and Disciplines to Achieve Forest Sustainability: A Framework for Effective Integrated Modeling’.
The papers in the special feature provide case studies that reflect two interacting themes:
- interdisciplinary approaches for sustainable forest landscape management, and
- the importance of scaling issues when integrating socioeconomic and ecological processes in the modeling of managed forest ecosystems.
These issues are well related to the project I’m currently working on that is developing an integrated ecological-economic model of a managed forest landscape in Michigan’s Upper Peninsula. One paper that caught my eye was by Sturtevant et al., entitled ‘A Toolkit Modeling Approach for Sustainable Forest Management Planning: Achieving Balance between Science and Local Needs’.
Sturtevant et al. suggest that forest managers are generally faced with a “devil’s choice” between using generic ‘off-the-shelf models’ where information flows primarily from researchers and planners down to local communities versus developing case-specific models designed for a specific purpose or locale and based on information from the local actors. To avoid this choice, which Sturtevant et al. believe will seldom result in a satisfactory management result, they outline their proposal for a hybrid ‘toolkit’ approach. Their alternative approach “builds on existing and readily adaptable modeling ‘tools’ that have been developed and applied to previous research and planning initiatives”.
Their toolkit approach is
- collaborative – including stakeholders and decision-makers
- a ‘meta-modelling’ approach – the model is derived from other models and tools.
They then illustrate their toolkit approach using a case study from Labrador, Canada, highlighting the stages of establishing the issues, developing a conceptual model, implementing the meta-model, and then refining the model iteratively. They conclude:
“A toolkit approach to SFM [Sustainable Forest Management] analytical support is more about perspectives on information flow than on technical details. Certainly expertise and enabling technology are required to allow a team to apply such a framework. However, the essence of this approach is to seek balance between top-down (off the shelf, science-driven) and bottom-up (case-specific, stakeholder-driven) approaches to SFM decision support. We aim to find a pivot point, with adequate information flow from local experts and stakeholders to scientists, while at the same time avoiding “reinventing the wheel” (e.g. Fig. 1) by making full use of the cumulative experience of scientists and tools they have constructed.”
Although this ‘meta-model’ approach may save time on the technical model building side of things, many resources (time, effort and money) will be required to build and maintain relationships and confidence between scientists, managers and local stakeholders. This approach is really a modelling toolkit for management, with very little emphasis on improving scientific understanding. In this case the modelling is the means to the end of integrative/participatory management of the forest landscape.
The authors continue:
“The mixture of local experts and stakeholders who understand how the tools work, scientists who are willing and able to communicate their science to stakeholders, and integrated analytical tools that can simulate complex spatial and temporal problems will provide powerful and efficient decision support for SFM.”
Unfortunately, unless the scientists in question have the explicit remit to offer their services for management purposes, this sort of modelling approach will not be very appealing to them. In a scientific climate of ‘publish or perish’, management outcomes alone are unlikely to be enough to lure the services of scientists. In some cases I’m sure I will be wrong and scientists will happily oblige. But more generally, unless funding bodies become less concerned with tangible outputs at specific points in time, and academic scientists are judged less strictly by their publishing output, this situation may be difficult to overcome.
This situation is one reason the two sides of the “devils’ choice” are more well developed to the expense of the ‘middle-ground’ toolkit approach. ‘Off-the-shelf’ models, such as LANDIS, are appealing to scientists as they allow the investigation of more abstract and basic science questions than asked by forest managers. The development of ‘customized’ models is appealing to scientists because they allow more detailed investigation of underlying processes and provide a framework for the collection of empirical data collection. No doubt the understanding gained from these approaches will eventually help forest managers – but not in the manner of direct decision-support as the toolkit modelling approach proposes.
As a case in point, the ‘customized’ Managed Forest Landscape Model for Michigan I am working on is raising questions about underlying relationships between deer and forest stand structure. I’m off into the field this week to get data collection started for just that purpose.
 This work by James D.A. Millington is licensed under a Creative Commons Attribution-Noncommercial-Share Alike 3.0 United States License.
Posted in Academic, Landscapes, MichiganUP, Modelling, Sustainability | Comments Off
Thursday, May 22nd, 2008
 Last week I put together a presentation about our Michigan UP Ecological-Economic Modeling project for our funding body. I thought it would be useful to demonstrate the location of our study area in Google Earth, so I set about learning how to import ESRI shapefiles into Google Earth. I discovered it’s really easy.
My first stop in working this out was ‘Free Geography Tools‘ and their series of posts about exporting shapefiles to Google Earth. From their list of free programs, first I tried Shp2KML by Jacob Reimers. Unfortunately this program resulted in some security conflicts with our network so I couldn’t use it. Next I tried a second program, also called shp2kml, from Zonum Solutions and that worked a treat. Zonum have several other Google Earth tools that I’ll have to try out sometime.
You can download the kml file it produced for the boundary of our study area here (right click, ‘save as’ or whatever). If you have Google Earth installed you can then just double click that file (once downloaded) and Google Earth will take you right there. When I first created the link above, I hoped that when you clicked on it the file would open automatically in Google Earth – it didn’t. But after a little playing I found that kmz files will open automatically in Google Earth. kmz files are simply zipped (compressed) kml files – I used WinRar to zip the kml file and then changed the file suffix from zip to kmz. Click here – the study area file will open automatically in Google Earth (from Firefox at least – see note below). Sweet.
I also exported shapefiles for DNR and private industrial stand boundaries which match up nicely with spatial patterns of vegetation observed in the landscape. Obviously, I can’t post these shapefiles online, but you can see evidence of land ownership boundaries in our study area right here. The light green rectangular area is non-DNR land and has been clear cut. The surrounding area is managed by the DNR (possibly selective timber harvest) – the resulting land cover from different management approaches is stark. These are the sorts of patterns and issues we will be able to examine using our ecological-economic landscape model.
[Note - When posting the presentation to our web server I also learned about MS Internet Explorer .png issues. They say they've fixed them, but there still seem to be some problems - try viewing this page in both IE and Firefox and note the difference (hover your cursor over the words at the bottom). Viewing the presentation pages in Firefox means the links to the .kmz files are active - they are not in IE. The issue arose becasue I used OpenOffice Impress to convert my MS PowerPoint file to html files.]
 This work by James D.A. Millington is licensed under a Creative Commons Attribution-Noncommercial-Share Alike 3.0 United States License.
Posted in Computing, MichiganUP, Web | 2 Comments »
Friday, May 16th, 2008
I’ve been back from our study area in Michigan’s Upper Peninsula for over a week so it’s about time I posted something about what we were doing up there.
One of the main issues we will study with our integrated ecological-economic landscape model is the impact of whitetail deer (Odocoileus virginianus) herbivory on tree regeneration following cutting. Last November we spent a week planting 2 year-old seedlings in Northern Hardwood forest gaps created by selective timber harvest (like the one in the photo below).
Our plan was to return this spring to examine the impacts of deer browse on these seedlings. In particular, we wanted to examine how herbivory varies across space due to changes in deer population densities (in turn driven by factors such as snow depth).
To this end we selected almost 40 forest sites that would hopefully capture some spatial variation in snowfall and that had recently been selectively harvested. At each site we selected 10 gaps produced by timber harvest in which to plant our seedlings.
In each gap we planted six trees of each of three species: White Spruce (Picea glauca), White Pine (Pinus strobus) and Eastern Hemlock (Tsuga canadensis). We chose these coniferous species as these are examples of the mesic confer species the Michigan DNR are trying to restore across our study area, and because we expected a range of herbivory across these species.
At each site we would also undertake deer pellet counts in the spring to estimate the number of deer in the vicinity of the site during the winter (during which time the browse we were measuring would have occurred).
On returning to the study sites a couple of weeks ago we set about looking for the trees we had planted to measure herbivory and count deer pellets. In some cases, finding the trees we planted was easier said than done. We tried to get our field crews to plant the trees in straight lines with equal spacing between each tree. In general, this was done well but on occasion the line could only be described as crooked at best. Micro-topography, fallen tree trunks and limbs, and slash from previous cutting all contributed to hamper the planned planting system. However, we did pretty well and found well over 90% of the trees.
We haven’t begun analyzing our data as yet, but some anecdotal observations stand out. First, the deer preferentially browsed Hemlock over the other species, often removing virtually all non-woody biomass as shown by the ‘before and after’ examples below (NB – these photographs are not of the same tree and this is not a true before/after comparison).


In some cases, the deer not only removed all non-woody biomass but also pulled the tree out of the ground (as shown below).
In contrast, White Pine was browsed to a much lesser extent and White Spruce was virtually untouched (as shown below).
Having a species that was unaffected by deer (i.e. spruce) often made our job of finding the other trees much easier. Finding heavily browsed Hemlock that no longer had any green vegetation was often tricky against a background of forest floor litter.
The next step now is to start looking at this variation in browse through a more quantitative lens. Then we can start examining how browse and deer densities vary across space and how these variables are related to one another and other factors (such as snow depth and distance to conifer stands).
All-in-all the two weeks of work went pretty well. There were some issues with water-logged roads (due to snow melt) meaning we couldn’t get to one or two of the sites we planted at, but generally the weather was pretty good (it only rained heavily one day). I’ll write more once we have done more analysis and stop here with a shot I took at sunrise as I left for home.
 This work by James D.A. Millington is licensed under a Creative Commons Attribution-Noncommercial-Share Alike 3.0 United States License.
Posted in Ecological, Environmental, Geographic, Landscapes, MichiganUP, Photography | Comments Off
Tuesday, May 13th, 2008
So I’m back from fieldwork in the UP (via upstate New York). Megan (the Masters student working on our project) is still up there working hard for another week or two though. I’ll write more about what we were doing (with some pictures) when I have time later this week.
In the meantime, you could checkout the MSU Department of Fisheries and Wildlife website, which has just been re-designed and went live today.
 This work by James D.A. Millington is licensed under a Creative Commons Attribution-Noncommercial-Share Alike 3.0 United States License.
Posted in MichiganUP | Comments Off
Friday, April 25th, 2008
I’m back in the UP for more fieldwork. Last time I was up here was right before the start of hunting season last year. Since then a hard winter has passed and is now just being replaced by spring. There’s still snow on the ground in the northern areas of our study area, but it’s melting fast. Over the next couple of weeks we’ll be doing deer pellet counts (as a proxy for numbers of deer) to supplement previous data and to try to get a better gauge on how snowfall affects the spatial distribution of deer during the winter. We need to do these as soon after the snow melts before ground level vegetation re-grows and obscures the pellets. We’re also going to count pellets in the stands where we planted tree seedlings last fall. Then we’ll compare the estimated deer numbers in the stands with the browse on the seedlings we planted (if there’s anything left of them at all!) to try to get a more precise handle on how deer density relates to browse impact of different species.
So that’s my next few weeks – counting deer poo in the UP forests. I doubt I’ll be online much so this might be the last blog for a week or two. I’ll take some photos and maybe post them when I’m back in Lansing.
 This work by James D.A. Millington is licensed under a Creative Commons Attribution-Noncommercial-Share Alike 3.0 United States License.
Posted in Ecological, Forests, MichiganUP | Comments Off
Sunday, April 20th, 2008
 A brief and belated summary of the 23rd annual US-IALE symposium in Madison, Wisconsin.
The theme of the meeting was the understanding of patterns, causes, and consequences of spatial heterogeneity for ecosystem function. The three keynote lectures were given by Gary Lovett, Kimberly With and John Foley. I found John Foley’s lecture the most interesting and enjoyable of the three – he’s a great speaker and spoke on a broader topic than the the others; Agriculture, Land Use and the Changing Biosphere. Real wide-ranging, global sustainability stuff. He highlighted the difficulties of studying agricultural landscapes because of the human cultural and institutional factors, but also stressed the importance of tackling these tricky issues because ‘agriculture is the largest disturbance the biosphere has ever seen’ and because of its large contribution to greenhouse gas emissions.
Presentations I was particularly interested in were mainly in the ‘Landscape Patterns and Ecosystem Processes: The Role of Human Societies’, ‘Challenges in Modeling Forest Landscapes under Climate Change’ and ‘Cross-boundary Challenges to the Creation of Multifunctional Agricultural Landscapes’ sessions.
In the ‘human societies’ session, Richard Aspinall discussed the importance of considering human decision-making at a range of scales and Dan Brown again highlighted the importance of human agency in spatial landscape process models. In particular, with regards modelling these systems using agent-based approaches he discussed the difficulty of model calibration at the agent level and stressed that work is still needed on the justification and evaluation phases of agent-based modelling.
The ‘modeling forest landscapes’ session was focused largely around use of the LANDIS and HARVEST models that were developed in and around Wisconsin. In fact, I don’t think I saw any mention of the USFS FVS at the meeting whilst I was there, largely because (I think) FVS has large data demands and is not inherently spatial. LANDIS and HARVEST work at more coarse levels of forest representation (grid cell compared to FVS’ individual tree) allowing them to be spatially explicit and to run over large time and space extents. We’re confident we’ll be able to use FVS in a spatially explicit manner for our study area though, capitalising on the ability of FVS to directly simulate specific timber harvest and economic scenarios.
The ‘multifunctional agricultural landscapes’ session had an interesting talk by Joan Nassauer on stakeholder science and the challenges it presents. Specific issues she highlighted were: 1. the need for a precise, operational definition of ‘stakeholder’ 2. ambiguous goals for the use of stakeholders 3. the lack of a canon of replicable methods 4. ambivalence toward the quantification of stakeholder results
Other interesting presentations were given by Richards Hobbs and Carys Swanwick. Richard spoke about the difficulties of ‘integrated research’ and the importance of science and policy in natural resource management. He suggested that policy-makers ‘don’t get’ systems thinking or modelling, and that some of this may be down to the psychological profiles of the types of people that go into policy making. Such a conclusion suggests scientists need to work harder to bridge the gap to policy makers and do a better job of explaining the emergent properties of the complex systems they study. Carys Swanwick talked about the landscape character assessment, which was interesting for me having moved from the UK to the US about a year ago. Whilst ‘wilderness’ is an almost alien concept in the UK (and Europe as a whole), landscape character is something that is distinctly absent in the new world agricultural landscapes. Carys talked about the use of landscape character as a tool for conservation and management (in Europe) and the European Landscape Convention. It was a refreshing change from many of the other presentations about agricultural landscape (possibly just because I enjoyed seeing a few pictures of Blighty!).
Unfortunately the weather during the conference was wet which meant that I didn’t get out to see as much of Madison as I would have liked. Despite the rain we did go on the Biking Fieldtrip. And yes, we did get soaked. It was also pretty miserable weather for the other fieldtrip to and International Crane Foundation center and the Aldo Leopold Foundation (more on that in a future blog), but interesting nevertheless.
Other highlights of the conference for me were meeting the former members of CSIS and eating dinner one night with Monica Turner. I also got to meet up with Don McKenzie and some of the other ‘fire guys’, and a couple of people from the Great Basin Landscape Ecology lab where I visited previously. And now I’m already looking forward to the meeting next year in Snowbird, Utah (where I enjoyed the snow this winter).
 This work by James D.A. Millington is licensed under a Creative Commons Attribution-Noncommercial-Share Alike 3.0 United States License.
Posted in Academic, Ecological, Economic, Environmental, Geographic, Landscapes, MichiganUP, Modelling, Political, Social | Comments Off
Saturday, April 5th, 2008
 Final preparations are underway for the US-IALE Symposium in Madison, WI, next week. I’ve finished the poster that we’ll be presenting there on the progress we’re making withour ecological-economic forest landscape model. We’ve also been putting the finishing touches on our posters for the wildfire session at EGU in Vienna (which Raul will be attending and presenting our posters at). Links to .pdf versions of the posters are below. Thoughts and photos from Madison and Chicago (where I’ll be stopping off for a couple of days on the way home) on my return.
An Ecological-Economic Model for Sustainable Forest Management: Modeling Deer Distributions from Local & Landscape Characteristics J.D.A. Millington, J.P. LeBouton, M.B. Walters, K.R. Hall, M.S. Matonis, E.J. Laurent, F. Lupi, S. Chen, J. Liu
An Integrated Socio-Ecological Simulation Model of Succession-Disturbance Dynamics in a Mediterranean Landscape J.D.A. Millington, J. Wainwright, G.L.W. Perry, R. Romero-Calcerrada, & B.D. Malamud
Spatial modelling of the influence of human activity on wildfire ignition risk in a Mediterranean landscape R. Romero-Calcerrada, F. Barrio-Parra, J.D.A. Millington, C.J. Novillo
 This work by James D.A. Millington is licensed under a Creative Commons Attribution-Noncommercial-Share Alike 3.0 United States License.
Posted in Academic, MichiganUP, Publications, Wildfire | Comments Off
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